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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTCGTTGATGACAAACTTAGACTTGGTTTGAAGGCTCAGCCTGTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtgttttttttttttttttcacctcatcattctagtattagtcacaaatcaatttaaaagtattattcctatgaataaaatctagttattgaaacaaggttcaataatatctgatactagcttggcacatattttcttttatag

Basic information

species Glycine max
transcript GLYMA04G05980.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05980.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv04s0008g02070.t01 (Vitis vinifera), 5'ss of exon 1
GGGTTTCGTTGATGACAAACTTAGACTTGGTTTGAAGGCTCAGCCTGTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtgtttttttttttttttt-cacctcatcattctagtattagtcacaaatcaatttaaaagtattattcctatgaataaaatctagttattgaaacaaggttcaataatatctgatactagcttggcacatattttcttttatag
||| ||| | || || || ||||| |     ||||||||||||||||| |||||||||  ||| |||||||||||| | ||||| || || || ||||||||| || | |    |      ||   || |||  ||||  ||||          |  | || |  || | |  || |   | || |||      |    |  || || |||| ||| | |  |   | |                    
GGGGTTCATAGACGAAAAGCTTAGGCCAAAGTTGAAGGCTCAGCCTGTAGCTGTGAAATTACTTGACTTGGATGGCCTTCAAGGCCATAGAGAATGGCTGgtttgtttctgaactgacgaattattccccatagttcttatatt----------ctgtgtatagatactgtgtcttttggtcaattcttccacct----cttggatcgataaaatcgggttttttgtag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213613492|gb|DB963236.1|DB963236
EST:     CTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTG                         GCAGAAATTATATTTCTTGGACAGCTGAGACATCCGCATCTTGTTAAGTTA
genomic: CTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagtgttt ... tcttttatagGCAGAAATTATATTTCTTGGACAGCTGAGACATCCGCATCTTGTTAAGTTA