1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACCCTTCGAGTTTCGAAAACCCTAACCCCACAACCCCCTCTCACAAACTCACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttcgttacttagctgctattcagatttaatttatagattactatcgctcttttgcacggatcgatttattctctggcataaaaaatctttatt...
species | Glycine max |
transcript | GLYMA04G05580.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGTEST: gi|11412316|gb|BF424327.1|BF424327
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTEST: gi|13478011|gb|BG507660.1|BG507660
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTEST: gi|209718869|gb|BW669056.1|BW669056
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCTGAAGGATCACAATTTGATGCTCGTEST: gi|11689059|gb|BF596735.1|BF596735
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAAEST: gi|213610635|gb|DB961110.1|DB961110
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAA
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCTGAAGGATCACAATTTGATGCTCGTEST: gi|209717675|gb|BW671519.1|BW671519
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCTGAAGGATCACAATTTGATGCTCGTEST: gi|254319672|gb|GR830804.1|GR830804
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGTEST: gi|209707836|gb|BW683732.1|BW683732
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGGCTGAAGGATCACAATTTGATGCTCGTEST: gi|298185063|gb|HO030276.1|HO030276
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
EST: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAG TTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
genomic: CACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttc ... ttctttgcagTTTGCTATCATGGCTGGGTTGGCGCCAGAAGGATCACAATTTGATGCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACCCTTCGAGTTTCGAAAACCCTAACCCCACAACCCCCTCTCACAAACTCACTCTTTTTCATTGTTTGATAATTCGAACTTCCTCCATCTTTCCCGAAGgtttgatttcgttacttagctgctattcagatttaatttatagattactatcgctcttttgcacggatcgatttattctctggcataaaaaatctttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaaa