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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCGTCGTTTGGGACTCTCACAAGTTCTCTACCACCATCCTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatcattcttctcttcctcgtacttactttaccgtgtttctataactgactgtgaattctaacaactaacattggtgcag

Basic information

species Glycine max
transcript GLYMA04G05500.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05500.1 (Glycine max), 5'ss of exon 1
lower sequence: EDP02415 (Chlamydomonas reinhardtii), 5'ss of exon 3
TTTCGTCGTTTGGGACTCTCACAAGTTCTCTACCACCATCCTGCCTCGCTACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatcattct---tctcttcctcgtacttactttaccgtgtttctataactga--ctgtgaattctaacaactaacattggtgcag-------------
 ||| | || ||| |  | |   ||||  |      | | || ||     |||||||||||||||||||||||||||| || || || ||||||||||| |||||   |   |    |  |  |  |   ||| ||  |||  | ||| |  |  |   ||| |||       || |     ||| || |             
CTTCATTGTATGGAAGCCACCGGAGTTTGCGCGGGACTTGCTACCCAAACACTTCAAGCACAACAATTTCTCCAGCTTTGTGCGCCAGCTCAACACCTATgtaagtccccggcaaggttgcagcaccaagcttgct--acctaggttcaaggaggggtgctgggaagagggggaa-tgcggctggggcggccgccggggagcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692806|gb|BM521654.1|BM521654
EST:     ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTAC                         GGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
genomic: ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatca ... attggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
EST: gi|16996721|gb|BM086093.1|BM086093
EST:     ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTAC                         GGTTTTAGAAAAATTGATCCTGACAAGTGNNNNNNNGCGAACGAAGGGTTT
genomic: ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatca ... attggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
EST: gi|209705786|gb|BW661454.1|BW661454
EST:     ACTTCGAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTAC                         GGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
genomic: ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatca ... attggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
EST: gi|213601427|gb|DB968729.1|DB968729
EST:     ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTAC                         GGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
genomic: ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatca ... attggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
EST: gi|6341760|gb|AW164509.1|AW164509
EST:     ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTAC                         GGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT
genomic: ACTTCAAGCACAACAATTTCTCCAGCTTCGTACGACAACTCAACACCTACgtaagcatca ... attggtgcagGGTTTTAGAAAAATTGATCCTGACAAGTGGGAGTTTGCGAACGAAGGGTTT