1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAAGTCATGGCAGGCTCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatcttgtctaatcaatttccattttttcccttaatttatttgcttttgttttcttcttgttaccctgaaggatcaatgctattatgtattcga...
species | Glycine max |
transcript | GLYMA04G03030.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATEST: gi|298168092|gb|HO013355.1|HO013355
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTATGAATATGCCAAAAACTTATEST: gi|7685262|gb|AW755910.1|AW755910
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATEST: gi|298180364|gb|HO025565.1|HO025565
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGTTGTGAATATGCCAAAAACTTATEST: gi|298192192|gb|HO036274.1|HO036274
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATEST: gi|15202686|gb|BI425532.1|BI425532
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGATATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATEST: gi|298182088|gb|HO026263.1|HO026263
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATTCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATEST: gi|298167093|gb|HO010532.1|HO010532
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACCTATEST: gi|298189623|gb|HO038026.1|HO038026
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
EST: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAG TTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
genomic: TCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatc ... attatgtcagTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGTCATGGCAGGCTCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGgttcttcatcttgtctaatcaatttccattttttcccttaatttatttgcttttgttttcttcttgttaccctgaaggatcaatgctattatgtattcga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG