Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttgccctttctcttctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcactgttattaaaatccatta...

Basic information

species Glycine max
transcript GLYMA04G02530.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g02840.1 (Oryza sativa), 5'ss of exon 1
AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttgccctttctcttctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcactgttattaaaatccatta-
 ||||| ||||| |||||||| ||||||||||||||||| ||||| || |||||||| |||||| || | || |||||||||  |||||| || ||||| ||   | |  ||   |||  |||||| | || |  ||     || |||  | |     | |     || |  |||      || || ||||      ||  
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACCGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACTgtgcgtattcttcttcttcttcttcttc-ttcttcctccaaacatttccttttcttcttcttcttctttcttttgcttcttctttttttaattatttttga

upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G803949_T01 (Zea mays), 5'ss of exon 1
AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttgccctttctcttctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcactgttattaaaatccatta-
 ||||| ||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |||||| || | ||||||||||||  |||||| || ||||| ||      ||   ||  |     | || ||| |   |  |    |         ||| |  |   |  ||    ||    |  | |  |      |  |  
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATTTCCTACACCTCCAACACCTTCCCCACCgtacgcccctcctcctctgacggtttcaatttttttttctggggggagtccccggattttgaattgcggcggcggtcttgatcgat-ctggggcgcgctgg

upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 1
AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttctttgccctttctctt-ctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcactgttattaaaatccatta
 ||||| ||||| |||||||| ||||||||||| ||||| ||||| || |||||||| |||||| || | || |||||||||  |||||| || ||||| ||    | |||   |||   | || ||||  |  |     || || ||   | | |        |    |  ||| | |     |         |  ||  
GATGAGCGCGTCCAGGTTCATAAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTCCTACACCTCCAACACCTTCCCCACCgtacgctccttcctcctcattgttgctccgctggaga-ggtttcatttttttttggggggtcccggtccgggattttgaattgcgacggcgttcttgatcg

upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g14670.t01 (Vitis vinifera), 5'ss of exon 1
AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttc---tttgccctttctcttctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcac-tgttattaaaatccatta
 ||||| || || ||||| || |||||||| || ||||| || ||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||  || |   ||| |   ||||    |    |||   |  |||  |   || || ||   | |      | ||    ||| |  || | | |||    |   
GATGAGCGCCTCTAGGTTTATAAAGTGCGTTACGGTCGGTGATGGTGCTGTCGGCAAAACCTGCATGCTGATTTCCTACACCAGCAACACTTTCCCTACGgttagttccccattttctgattctaggtttttgtatctttggttcttgga-aagatcgagggaaagcaagaggaaccaaaagaaaatgctctaaaagaaaa---

upper sequence: GLYMA04G02530.3 (Glycine max), 5'ss of exon 1
lower sequence: EFJ09765 (Selaginella moellendorffii), 5'ss of exon 1
AATGAGTGCGTCGAGGTTCATTAAGTGCGTCACCGTCGGCGACGGTGCTGTCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtt---tctttctttgccctttctcttctccattataactaattccagttcaatatagatatatatgcgttgcaattgtaagcactgttattaaaatccatta
 |||||  | || || || || |||||||| |||||||| || ||||| || ||||| || ||| || | ||||| ||||| ||||||||||| ||||| ||    | |   ||||  |||||  || ||   | |||||   |   | |          ||  |                                      
CATGAGCACTTCAAGATTTATCAAGTGCGTTACCGTCGGAGATGGTGCGGTGGGCAAGACTTGCATGCTCATTTCATACACGAGCAACACTTTCCCCACTgtgagatttcgttttgttctttcctttttc---tctaactctcttgggctgggatcgttcatcaacag-----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014216|gb|CX700958.1|CX700958
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|14258618|gb|BG881526.1|BG881526
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|208228807|gb|GE024227.1|GE024227
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGT
EST: gi|207827775|gb|GD800368.1|GD800368
EST:     CACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: CACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|9563948|gb|BE473457.1|BE473457
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|192331824|gb|FK024928.1|FK024928
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|207836636|gb|GD806633.1|GD806633
EST:     CACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTTGGTGGA
genomic: CACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGG-TGGTGGA
EST: gi|58021086|gb|CX707828.1|CX707828
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
EST: gi|151393592|gb|EV263467.1|EV263467
EST:     TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACG                         GACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT
genomic: TCGGCAAAACCTGCTTGTTGATTTCCTACACCAGCAACACTTTTCCCACGgtttctttct ... tcaataatagGACTATGTGCCCACCGTTTTTGACAATTTCAGTGCTAATGTGGTGGTGGAT