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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCCTCATTATTATCATAGTAGATATTCATTCCCCTTATCTTTCTCTCTTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtatttcccctcaattttcttcgtctttccggaattctcttcgttttccggctattttcttcagttttctacgaattcctgacctaaaaactaacctgattgtgtgattgcag

Basic information

species Glycine max
transcript GLYMA04G01840.8
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208329120|gb|GE128416.1|GE128416
EST:     TTCACTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193340893|gb|FK307170.1|FK307170
EST:     GCCCAAACCCCTAAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: GCCCAAA-CCCT-AACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193547162|gb|FK499559.1|FK499559
EST:     CTCTCCTCCCCGACCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CTCT-CTCCCCG-CCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|208240700|gb|GE037248.1|GE037248
EST:     TCTCTCCTCCCCGCCCAAACCCTAACTCCCTA-CCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TCTCT-CTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193434275|gb|FK399321.1|FK399321
EST:     CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|193629203|gb|FK578151.1|FK578151
EST:     CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: CCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207785780|gb|GD757879.1|GD757879
EST:     TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAAAGCCGATG
genomic: TTCTCTCTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
EST: gi|207690945|gb|GD671567.1|GD671567
EST:     CTCTCGTCCCCGCCCAAACCCTAACTCCCTACCCTATTCCGGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
genomic: CTCTC-TCCCCGCCCAAACCCTAACTCCCTACCCTATTCC-GCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGAT
EST: gi|10233700|gb|BE802588.1|BE802588
EST:     TAACTCCCTACCCTATTCCGCTTTCTCT                         CATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG
genomic: TAACTCCCTACCCTATTCCGCTTTCTCTgtacgtattt ... gtgattgcagCATCCATCATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATG