1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTTCCATTCCATGGCCAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcattcactcgctttctcggccaaaaattaaaaaaaaagagatgaattctgttttgtgctctctctgtttgattgtcctaaatcgaaacgcgcgtttcgttcttgtctctcag
species | Glycine max |
transcript | GLYMA04G01140.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|151404297|gb|EV274107.1|EV274107
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|4314010|gb|AI461129.1|AI461129
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|20811514|gb|BQ295992.1|BQ295992
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: GTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|298169727|gb|HO021087.1|HO021087
genomic: GTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|13562988|gb|BG551208.1|BG551208
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|13562907|gb|BG551127.1|BG551127
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|4297480|gb|AI442624.1|AI442624
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACGEST: gi|298163162|gb|HO011895.1|HO011895
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
EST: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAG CTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
genomic: ACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcat ... tgtctctcagCTGGCGATTGCGTGCTCATGCGGCCCTCCGATCTGTCGAAACCGTCGTACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCATTCCATGGCCAAACCGAAGGCTCCAAGACGAACCCTAGAGTCATACTCAGTCAAACACATAAGCAAAACCATTAGAGgtaaacgcattcactcgctttctcggccaaaaattaaaaaaaaagagatgaattctgttttgtgctctctctgtttgattgtcctaaatcgaaacgcgcgtttcgttcttgtctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA