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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGAAGGGAAGCCTAGGGATGCAAAATCCAGGTTATTAAGTTTCTTGTGGCATGGGGGTTCTGTTTATGATGCTTGGTTTAGCTGTGCTTCCAACCAGgttagtttctgattacaatggctttatgctccattttatgtagcgtccaatacattggttcgatctctttacatgcttttcaaattaatgtttattttcatacacacatgtcag

Basic information

species Glycine max
transcript GLYMA04G00640.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 1
AAGTGAAGGGAAGCCTAGGGATGCAAAATCCAGGTTATTAAGTTTCTTGTGGCATGGGGGTTCTGTTTATGATGCTTGGTTTAGCTGTGCTTCCAACCAGgt--tagtttctgattacaatggctttatgctccattttatgtagcgtccaatacattggttcgatctctttacatgcttttcaaattaatgtttattttcatacacacatgtcag
 |  || || ||  ||   ||    ||||| | | |||      | || |||||||| || |||| ||||||||||||||| |||||||||||||| |||||  ||| ||    | | |      | |||  | | |||  ||    |  |||| ||   ||   ||||| | | |    |||  ||| |||  | |  |  || | |        
GAAGGATGGTAAAGCTTTAGACATCAAATCTAAGCTATCTGACATGTTTTGGCATGGTGGCTCTGCTTATGATGCTTGGTTCAGCTGTGCTTCCAATCAGgtaatagctttctctcagatgaaaatgatgaacaagttttggt----ttaaatatat--atttagtctctctgcttatgattctgattcatgaatgtgctattatatag-------

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 1
AAGTGAAGGGAAGCCTAGGGATGCAAAATCCAGGTTATTAAGTTTCTTGTGGCATGGGGGTTCTGTTTATGATGCTTGGTTTAGCTGTGCTTCCAACCAGgttagtttctgattacaatggctttatgctccattttatgtagcgtccaatacattggttcgatctctttacatgcttttcaaattaatgtttattttcatacacacatgtcag
 | |||||| |||||   |||||  ||  | ||| | |  |  ||||| |||||||| || ||||| |||||||| ||||||||||||||||| |||||||      ||| |  |  |    |||    |  |||||  || | |   ||   |       || || |   ||  |  |||  |||   ||||  |||  | ||          
GACTGAAGGCAAGCCCCAGGATGTGAAGACAAGGCTGTCCAAGTTCTTCTGGCATGGTGGCTCTGTGTATGATGCCTGGTTTAGCTGTGCTTCAAACCAGg------tctcaccatgaaaaattt----tgtattttgagttgagaaaaaatgaaaaaaaggaactttagtcacccacttc--atttgggtttggtttgtttcag---------