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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTAGTAATTCAAAATTTGTGGTAAAGCAAATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctgtttccctaaccctaactatgtttttcccgcggcactgttaatttaacatgtcgtttatacttgttcag

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208257927|gb|GE054500.1|GE054500
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|207779367|gb|GD751625.1|GD751625
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|192297484|gb|FG989519.1|FG989519
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|298181686|gb|HO025861.1|HO025861
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|298191416|gb|HO038895.1|HO038895
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGTGGCTTTTCGCAACTCAATCA
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCA
EST: gi|208083021|gb|GD882203.1|GD882203
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|298173640|gb|HO016976.1|HO016976
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
EST: gi|298195373|gb|HO039204.1|HO039204
EST:     ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAG                         ATGAGGCTTTTCACAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT
genomic: ATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGgtgtttgctg ... acttgttcagATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT