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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATTGCGTGTGTGAGAGATGCAGCAGCACCTGATGCAGATGCAGCCTATGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttctatcttcttctcagcttcttcctctctgcactaccattccccttcatcttatcttttatctcttctgctagctcactttggatatactagt...

Basic information

species Glycine max
transcript GLYMA03G40930.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40930.2 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28640.1 (Arabidopsis thaliana), 5'ss of exon 1
TATATTGCGT-GTGTGAGAGATGCAGCAGCACCTGATGCAGATGCAGCCTATGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttctatcttcttctcagcttcttcctct-ctgcactaccattccccttcatcttatcttttatct-cttctgctagctcactttggatatactagt
 ||||    | |    ||| ||||| ||||||||||||||||||||||| |||||||| |  |||||||||| ||| || ||  ||||||| || || ||||| |  ||||   |      |  || |||| ||| ||    ||  ||  |  |   | || | | |||| |  ||||   |  |||    ||| |    |  
-ATATAAAATAGCAAAAGAAATGCAACAGCACCTGATGCAGATGCAGCCCATGATGGCTGGTTACTACCCCAGCAATGTTACCTCTGATCATATCCAACAGgttctcttctccttctcctccttctccttcttcttctattatattatctctttcttttttctttattatatgtttctttgaattcataaaggaaagtgaa--

upper sequence: GLYMA03G40930.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0081g00200.t01 (Vitis vinifera), 5'ss of exon 1
TATATTGCGTGTGTGAGAGATGCAGCAGCACCTGATGCAGATGCAGCCTATGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgt-ttctatcttcttctcagcttcttcctctctgcactaccattccccttcatcttatcttttatctcttctgctagctcactttggatatactagt
   ||   | | | |||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | | |||| |  |||      ||||| | |||||    |    ||   | |  | ||          |  | || |  ||   |||   | |  |  |
GGGATATAGAGAGAGAGAAATGCAGCAGCACCTGATGCAGATGCAGCCCATGATGGCAGCCTATTACCCCAGCAACGTCACCACTGATCACATTCAGCAGgttcctcttctcttctctctctttcttctccttctctctcttttttttttgccttttttttgggggagggttctttgttc-ctgtttttccctttcttcct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207701342|gb|GD683973.1|GD683973
EST:     CCCAACAACGTCACCACTGATCACATTCAGCAG                         TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: CCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: gi|208159230|gb|GD953817.1|GD953817
EST:     TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG                         TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: gi|208287799|gb|GE081334.1|GE081334
EST:     TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG                         TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: gi|193419354|gb|FK385314.1|FK385314
EST:     TGATGGCAGCCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG                         TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: TGATGGCAGCCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
EST: gi|193584554|gb|FK538980.1|FK538980
EST:     CCTACTACCCCAACAACGTCACCACTGATCACATTCAGCAG                         TATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT
genomic: CCTACTACCCCAACAACGTCACTACTGATCACATTCAGCAGgtccgtttct ... ttacttgcagTATCTGGATGAGAACAAGTCCTTAATTCTGAAGATTGTTGAAAGCCAGAAT