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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttattatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag

Basic information

species Glycine max
transcript GLYMA03G40550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28080.2 (Arabidopsis thaliana), 5'ss of exon 3
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttattatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag
                           | |||||||| ||||| |  ||| |||| ||||||||||| |||||||||||||||||||||||| | ||||||| || |     |       ||  | | |||  |||  | | ||  ||   | |||      | |  |||||| | |||| |                                
AACACAAAAGCATCATGAAGTTCTACGCTTCTTGGGTCGATACCGATAATCGAAACATCAACTTTGTCACTGAAATGTTCACTTCTGGCACCTTGAGACAgtaagcttatctc-------tctatctcataagtga--agt-tctcttgataacttactcataatgtttttatatctttcatgcag----------------------------

upper sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G04910.1 (Arabidopsis thaliana), 5'ss of exon 3
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttat-tatatatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag
                           | |||||||| ||||| || ||| |||||||||| || || |||||| ||||||||||||||||| | ||||||| || | |     |   ||| ||| | | |   || |  |  |  || || | |    || || ||  |||||   |                                     
AACATAAGAACATCATGAAATTCTACACTTCTTGGGTCGATACCGCCAATCGAAATATCAATTTCGTCACTGAATTGTTCACTTCTGGCACCTTAAGACAgtaagattctcttgtaaacatacttttctgtcgttggttttagtttatctttaac----gataacttcatttatggatacag---------------------------------

upper sequence: GLYMA03G40550.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0030g01660.t01 (Vitis vinifera), 5'ss of exon 3
---------------------------CATCTTGGGTTGATACAGCAAATAGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccctccattttcatccttattata-tatgatcattatccattttgagcttttgagaagttgttttatttttttcttcttttatttatttgttttaattatcacaatag
                           | |||||||||||||| || ||||| || ||||| ||||| ||||| |||||||||||||| || || || |||| |||  |||| | |||  |  | ||| || ||||    |  |      |||| |||| |   |||    |   ||||  | ||||| | | ||||        ||||  ||||
AACACAATAACATTATGAAGTTCTATACTTCTTGGGTTGATACTGCTAATAGGAACATCAATTTTGTCACTGAGATGTTCACTTCTGGGACTCTCAGGCAgtaagtatcctcgaattttctggtcattttagtatgtgggtcgt------tgagatttttaccggtttaaatgggttttcttgcttttctatgtttg--------atcatgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18692755|gb|BM521603.1|BM521603
EST:     AGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACA                         GTATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTG
genomic: AGAAATATCAACTTTGTGACTGAAATGTTCACTTCTGGCACCCTTAGACAgtgagttccc ... atcacaatagGTATAGGCAAAAGCACAAGAGAGTTAACATTAGGGCAGTGAAGCATTGGTG