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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctccacctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc...

Basic information

species Glycine max
transcript GLYMA03G40530.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G28060.1 (Arabidopsis thaliana), 5'ss of exon 1
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctccacctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc-----
 || | || |  | | | ||  | |   |||||||| || ||||| || ||| | ||| |||| ||||||||||||||||||||  |||| ||||| || ||||||| || | | |    | ||  |  | | || | |   | |     |   ||| | ||      |||| |    | |  |||   |   ||    |     
GACTGATCTCGGAAAGTAAATCGCAGCCATGGCGGAAAAAGCTGTCACTATCAGGACCAGAAACTTCATGACCAACAGGCTTCTCGCCAGAAAGCAATTCgtgagttcccatctctatgttccattttgcaatctcacagtgtta-----cgtcttcgctgtatcgaatgataaaaactatagtttaggtagaaacaatcttata

upper sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 5'ss of exon 1
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctccacctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc----
|     | |  |      |   | ||  ||||| || ||||| || || ||||||||| | || |||||||||||||| ||||| |||||||||||||| ||||||| || || ||| | | |   |||| | ||    |  | |  | |    |||   ||  | ||| | |     |||  ||  |  ||| ||  |     
TCACTTTAATCCTTGAGAAGTAGCAAAAATGGCTGAAAAGGCGGTCACCATCCGAACCAGGAAATTCATGACCAACAGACTTCTCTCCAGGAAGCAGTTCgtgagtt-ccattattttttttctcttctctatctgc--atatcatttttgttcttctgggttttgttttaatgggaatctagtt-ataatttgatatgaaccc

upper sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 5'ss of exon 1
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctcc------acctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc
    |    |  || |  | |   ||  |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||| |||        |  |        |  || ||  ||||  |  | |||        |||||   |    |||   ||  ||| ||       
CCTCGACAGCCGACTCCAAGCAACAACAATGGCGGACAAGGCCGTTACCATCCGAACCAGAAAGTTCATGACCAACAGGCTTCTTTCTCGCAAGCAGTTTgtgagtttccttttcttcctgtttggttccttggaaagcaaaagaaaatgaaggaaaatttttgttcctgtatttatcttagattcaatttactttgttc------

upper sequence: GLYMA03G40530.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S204_49V6.1 (Physcomitrella patens), 5'ss of exon 1
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctccacctaataacttgaaatatcactttcccagtcat---atttgattatttttctgctt-tgttttttaattcgc-
   ||| |   |   | | |     |  ||||| ||||||||    ||  | || || || |||||||||||||||||||| ||  ||||||||||||| || ||   || |    ||  |     ||||            || || ||    ||      ||    ||| || | ||    || || || || | | ||| | 
CTGAGCCCCAGCCAGCAGCAGCAGCATCATGGCTGACAAGGCGTGCACTGTGCGCACTCGCAAGTTCATGACCAACAGGCTGCTCGCCAGGAAGCAGTTCgtaagcacccgtggcctcctt-----tctcgcttagggtttctggaacattggcttgtgtaacacctcattagagttttcgcttggttgtggttgtgacttctca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171253|gb|HO016285.1|HO016285
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298196419|gb|HO041162.1|HO041162
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|27446063|gb|CA953186.1|CA953186
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|27426075|gb|CA937595.1|CA937595
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254327064|gb|GR836673.1|GR836673
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298180235|gb|HO025450.1|HO025450
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298183876|gb|HO029089.1|HO029089
EST:     TCCGAACCCGAAAGTTCATGACCAACGGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTCCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|16282391|gb|BI944991.1|BI944991
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|7925988|gb|AW832014.1|AW832014
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298189696|gb|HO038099.1|HO038099
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|20814204|gb|BQ298682.1|BQ298682
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192318269|gb|FK007243.1|FK007243
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGA
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAGGCTGA
EST: gi|298175026|gb|HO018021.1|HO018021
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGC-AATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209713209|gb|BW681744.1|BW681744
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|31561683|gb|CD487521.1|CD487521
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCANGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|21601272|gb|BQ611603.1|BQ611603
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|13252193|gb|BG363096.1|BG363096
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|58018209|gb|CX704951.1|CX704951
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCATGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|15200415|gb|BI424338.1|BI424338
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|42723081|gb|CK768980.1|CK768980
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298194484|gb|HO042956.1|HO042956
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254318387|gb|GR832555.1|GR832555
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192313980|gb|FK007684.1|FK007684
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|58015405|gb|CX702147.1|CX702147
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192318268|gb|FK007242.1|FK007242
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|19453438|gb|BM954848.1|BM954848
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192324648|gb|FK018744.1|FK018744
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCCTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|24135556|gb|BU926066.1|BU926066
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209725964|gb|BW669738.1|BW669738
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298189284|gb|HO037687.1|HO037687
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298165280|gb|HO011329.1|HO011329
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|8826160|gb|BE209820.1|BE209820
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|6668119|gb|AW279570.1|AW279570
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAT
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|38193940|gb|CF923146.1|CF923146
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254318388|gb|GR832556.1|GR832556
EST:     TCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|9901139|gb|BE610107.1|BE610107
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298196002|gb|HO044393.1|HO044393
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTCCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|12688142|gb|BG154478.1|BG154478
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298167029|gb|HO010468.1|HO010468
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGCTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298170829|gb|HO015805.1|HO015805
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192326516|gb|FK017263.1|FK017263
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192325307|gb|FK019163.1|FK019163
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192293851|gb|FG986060.1|FG986060
EST:     TCCGAACCCGGAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192321907|gb|FK013257.1|FK013257
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTC                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|31457405|gb|CD399433.1|CD399433
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192313979|gb|FK007683.1|FK007683
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298187566|gb|HO034715.1|HO034715
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209725963|gb|BW669737.1|BW669737
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|6133919|gb|AW132312.1|AW132312
EST:     GACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: GACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192323720|gb|FK016026.1|FK016026
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|7233923|gb|AW569265.1|AW569265
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|17022873|gb|BM093907.1|BM093907
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|38192623|gb|CF921829.1|CF921829
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192331482|gb|FK019927.1|FK019927
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298169027|gb|HO020387.1|HO020387
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|13787351|gb|BG649943.1|BG649943
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|58015724|gb|CX702466.1|CX702466
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|8282867|gb|BE020428.1|BE020428
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|26057723|gb|CA800637.1|CA800637
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|213602812|gb|DB970531.1|DB970531
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|151398399|gb|EV268270.1|EV268270
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|254330836|gb|GR842101.1|GR842101
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209713210|gb|BW681745.1|BW681745
EST:     TTCCAGGAAGCAGTTT                         GTCGTTGATG-TCTTCATACAAGGAGGGCAAATGTTTCCAAG
genomic: TTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|33388016|gb|CA851223.1|CA851223
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|16348615|gb|BI974210.1|BI974210
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|15661570|gb|BI698941.1|BI698941
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|151396176|gb|EV266053.1|EV266053
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|19268761|gb|BM885017.1|BM885017
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298176975|gb|HO023336.1|HO023336
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|57574155|gb|CX547130.1|CX547130
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|24205300|gb|BU964553.1|BU964553
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|24135628|gb|BU926138.1|BU926138
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|6951630|gb|AW423698.1|AW423698
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|209703725|gb|BW670688.1|BW670688
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298164178|gb|HO013823.1|HO013823
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAAGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|298192829|gb|HO033263.1|HO033263
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
EST: gi|192324998|gb|FK016139.1|FK016139
EST:     TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTT                         GTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG
genomic: TCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcc ... tgtgttgcagGTCGTTGATGTTCTTCATCCAGGGAGGGCAAATGTTTCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACAGCTCACACACACTGAACGGTAAGTATGGCGGACAAGGCTGTTACAATCCGAACCCGAAAGTTCATGACCAACAGGCTTCTTTCCAGGAAGCAGTTTgtgagtttcccttttttctctacaaatctccacctaataacttgaaatatcactttcccagtcatatttgattatttttctgctttgttttttaattcgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc