Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAGTGAGTGAGAGATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacctctcaccctcatctttttcatgccaatgtattctcttgcgctgcatgcaacacaaggaactaacaatattgcattctttgagtaatgatt...

Basic information

species Glycine max
transcript GLYMA03G40000.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40000.2 (Glycine max), 5'ss of exon 1
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 5'ss of exon 1
AGTGAGTGAGTGAGAGATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacctctcaccctcatctttttcatgccaatgtattctcttgcgctgcatgcaac-acaaggaactaacaatattgcattct--ttgagtaatgatt
 | ||||  |  |  |    |   |   |||  |||||||||||| || |||||||| |||||||| ||||| || || |||||||| || ||| |||||||| | ||||   |    || | | ||     | |||   ||  |  | | |   |  ||  |  | || |   ||| |    ||     ||  |   || | 
TGAGAGTTTGACACCGTCATCAATGGCAGAACCGGAGGTGATTCACTCATGGTCTGCACCAAGATCTCTCAGCACCAGCCTCATGTACTCCTTTGCTCAGgtactatacccaactttttcctatcttcttgacaaat---tttccaagtgttaactctaaagattatgatcatccaaaaccaaatctcaattctgctttgctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298180727|gb|HO022166.1|HO022166
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|213615160|gb|DB964968.1|DB964968
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|192301788|gb|FG997674.1|FG997674
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|213614510|gb|DB969115.1|DB969115
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|46492660|gb|CN472216.1|CN472216
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|298170197|gb|HO018821.1|HO018821
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
EST: gi|151396136|gb|EV266013.1|EV266013
EST:     GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTCTTCTCAG                         AGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA
genomic: GGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGgtattgtacc ... tgctacacagAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGA