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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTACCACGAGCTTTGAAGATGGTAAGTTGGCGTCTATGACCACCGATGACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctctctactccaatttcactcgccattacttttattcgtttatattatagctcttgatgagtttaaacatgattttgtaatgttgagttgtttttttgtgtttgaag

Basic information

species Glycine max
transcript GLYMA03G39500.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209727631|gb|BW663793.1|BW663793
EST:     ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAG                         GAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
genomic: ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctc ... gtgtttgaagGAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
EST: gi|23727048|gb|BU761539.1|BU761539
EST:     ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAG                         GAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
genomic: ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctc ... gtgtttgaagGAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
EST: gi|209718165|gb|BW657811.1|BW657811
EST:     ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAG                         GAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
genomic: ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctc ... gtgtttgaagGAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
EST: gi|298168340|gb|HO014515.1|HO014515
EST:     ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAG                         GAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
genomic: ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctc ... gtgtttgaagGAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
EST: gi|17400340|gb|BM177122.1|BM177122
EST:     ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAG                         GAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA
genomic: ACGTCGTCAGAGCCTCTCGTATTCTCGAAAACGATATTCGCATTCTCAAGgtctcttctc ... gtgtttgaagGAAGAGGTGCAGAGATCGAATCGGGAATGGGAATCGTACAAGGAGAAGATA