Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCTGCTTCAGCGGACGACGTCGTTGCACTCACAGAGGAAACCTTCGAAAACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcgaatcgtgattctctcatctcacgcgcgtccatttcattatttccattactatgaattatgaaatgcaaattattttttttttcgtttcag

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040454|gb|BM308748.1|BM308748
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|192297309|gb|FG992403.1|FG992403
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|208230666|gb|GE029859.1|GE029859
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|193593871|gb|FK548465.1|FK548465
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCA
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCA
EST: gi|298165334|gb|HO011383.1|HO011383
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|298196930|gb|HO041673.1|HO041673
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|208321264|gb|GE125477.1|GE125477
EST:     AACGAGGTTGGCAAGGATCGCGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|18041310|gb|BM309604.1|BM309604
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
EST: gi|4436994|gb|AI522859.1|AI522859
EST:     AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTG                         GTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC
genomic: AACGAGGTTGGCAAGGATCGTGCCGCTCTCGTCGAGTTTTACGCTCCCTGgtacgcgcga ... ttcgtttcagGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGAC