Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGCGAGGAAGAAGATCAGAGAGTACCACTCCAAGAGGCTTCTCAAGGAGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattcaccaactttttaacatgtctgttctgttctgttctgttctgaacttggattcttcgcag

Basic information

species Glycine max
transcript GLYMA03G38810.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192506|gb|HO036588.1|HO036588
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|208153162|gb|GD948741.1|GD948741
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|7588547|gb|AW704270.1|AW704270
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|213596238|gb|DB960170.1|DB960170
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|298186643|gb|HO037276.1|HO037276
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|298181603|gb|HO025778.1|HO025778
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|151395479|gb|EV265356.1|EV265356
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|298186900|gb|HO033999.1|HO033999
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|120495312|gb|EH223479.1|EH223479
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAG                         GTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT
genomic: AGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattc ... ttcttcgcagGTGACAGAATCTACGGATTTCACTGAGCTGACAGACCAGCATCCATGGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGGCGAGGAAGAAGATCAGAGAGTACCACTCCAAGAGGCTTCTCAAGGAGCATCTCAAACGTCTCGCCTCTATCGACCTCCAAATCCTCTCAGCTCAGgtttcaattcaccaactttttaacatgtctgttctgttctgttctgttctgaacttggattcttcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA