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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACgtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcag

Basic information

species Glycine max
transcript GLYMA03G38800.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G38800.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv14s0060g00460.t01 (Vitis vinifera), 5'ss of exon 2
CCAAAGAAAATGTCCTCGGTGAAGGCGGCTATGGAGTGGTTTATAGGGGACAGTTGATCAATGGAACTCCAGTGGCAGTTAAAAAGATACTTAATAACACgtgagcttcagtacagtgcccaattatccattatagttaccttagctgctttgtttttattcctctctagtctctattcggctaaaattcaactcctaagttttttgttttagcag
| || |||||||| || |||||||| || |||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| || || |||  ||||| || |  |||  || |  || |   ||     |   |||     ||  | |||||||||||   |      |||  ||| | || |||| ||||  || || | ||  |||
CAAAGGAAAATGTGCTTGGTGAAGGTGGATATGGAGTGGTTTACAGAGGACAGTTGATCAATGGGACGCCAGTGGCAGTTAAAAAGATCCTCAACAACCTgtgagtttaa--acatcgctccgttgtgt-ttccgactttgtta-tgatttcttatttattcctctggtga----gttcttctagagtttaacttctaaacttattttctt--cag