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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAACGATGCCGTTTCACTGGCAGTGGAAGTACCGCCCGGACCTCCACCTCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctctctctctctctctcagtgaaattatttctttagcatttttaatttgcttcattcttttttatagctatggtctctgtattgtaatgatttc...

Basic information

species Glycine max
transcript GLYMA03G38430.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075898|gb|BQ094681.1|BQ094681
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|5666588|gb|AI930624.1|AI930624
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGTCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|8283845|gb|BE021404.1|BE021404
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|213602988|gb|DB958576.1|DB958576
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|9986452|gb|BE660560.1|BE660560
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|208240886|gb|GE036860.1|GE036860
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
EST: gi|33390339|gb|CA853534.1|CA853534
EST:     TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCG                         TCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT
genomic: TCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctct ... gtattggcagTCTGTTTGGATGGAACATTGCCTGGTTACCACTTTCATCCTGGATTTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAACGATGCCGTTTCACTGGCAGTGGAAGTACCGCCCGGACCTCCACCTCTCATGGTCCCCCTCACTCTCATTCAGGGAGCTGCTTCCAAAGGAGCCGgtctctctctctctctctctctcagtgaaattatttctttagcatttttaatttgcttcattcttttttatagctatggtctctgtattgtaatgatttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc