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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGAACGGCGCACTTTATCTGAAAGCGAAAACCCTAGGGTCAACCGTGACGCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacacacacacacacacacacaccccttgcatttcaatccctacctacatgcttctctgcctcaattcctaatcggtaaaaattcacttttggccatggcag

Basic information

species Glycine max
transcript GLYMA03G38340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588977|gb|DB971514.1|DB971514
EST:     GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGG                         GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCNNNNNNNNCTGA
genomic: GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacaca ... gccatggcagGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGA
EST: gi|213610669|gb|DB961144.1|DB961144
EST:     TTTCAATCGCCTTCGACTTCTTTGCAACGG                         GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCNNNNNNNNCTGA
genomic: TTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacaca ... gccatggcagGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGA
EST: gi|209724628|gb|BW677721.1|BW677721
EST:     GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGG                         GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCNNNNNNNNCTGA
genomic: GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacaca ... gccatggcagGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGA
EST: gi|192304983|gb|FG996115.1|FG996115
EST:     GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGG                         GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCNNNNNNNGCTGA
genomic: GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacaca ... gccatggcagGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGA
EST: gi|192330459|gb|FK022646.1|FK022646
EST:     GCCACAATCGCTCCTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGG                         GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCNNNNNNNNCTGA
genomic: GCCACAATCGCTCTTGCGCGTTTCAATCGCCTTCGACTTCTTTGCAACGGgtaacacaca ... gccatggcagGATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGA