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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAGAGCGCAATCATAGTCCCTCTTTCTTCTCTTCCGCCATCGTTTTCTTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacctcttcttctccaaacctcattctcttcaaacgctaacgtttaatttttaagcggagtgggattccactttccccgagtgatcatagaatccgaagctctagggttaccgttactgttaaattaacctaacattgtatattaattttacctttttaaccccattctccgtttactccttgcag

Basic information

species Glycine max
transcript GLYMA03G37170.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4306331|gb|AI443889.1|AI443889
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|192311359|gb|FK003802.1|FK003802
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|208242573|gb|GE043363.1|GE043363
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCC
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCC
EST: gi|298177163|gb|HO027058.1|HO027058
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGATTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
EST: gi|192311360|gb|FK003803.1|FK003803
EST:     TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATG                         CTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG
genomic: TTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGgtaagtacct ... ctccttgcagCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATG