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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCACATGACCGAACCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataattccaatctcgtattctcggacattactattgttctcgagcgtgcgccacttgtctcgcttcttccaaccctaattttccgtttcgcctcgcag

Basic information

species Glycine max
transcript GLYMA03G36650.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 1
AAGCACATGACCGAACCCGAACTGCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataattccaatctcgtattctcggacattactattgttctcgagcgtgcgccacttgtctcgcttcttccaaccctaattttccgtttc-gcctcgcag
||| ||||||||||| |  | || || ||||||||||| |||||||| || || ||||| |||||||| ||||| |||||||| || ||||||||  |||||    |     ||| ||  |   ||||   | |    |  |      |  | | ||| || |  |     || | |   |  | |   ||||  |||     |
AAGAACATGACCGAAGCTCAGCTTCTGGCAATGTTCAAAGAGTTCGCTCTAGTGGACGAGGTCAACATCATCAAGGACAAAGCCACGCGTGCTTCAAGAGgt----tttcagcaaccttatgcactcgccaaatctcgtcttctctcggtttcctccaattctagccgcattttcgattttcctatggagtttttgccagatcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192326562|gb|FK017279.1|FK017279
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGCG                         GTTGTCGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
EST: gi|298175595|gb|HO018306.1|HO018306
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAG                         GTTGTTGCTTCGTAACTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
EST: gi|298167101|gb|HO010540.1|HO010540
EST:     CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAG                         GTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA
genomic: CGTCGACGAAGTCAACATAATCAAAGACAAAGCGACTCGTGCTTCCCGAGgtaccataat ... cgcctcgcagGTTGTTGCTTCGTAATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCA