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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAAGCATGTTAGTCATGTCACGTTCGATCGCTTCAATGGCTTTCTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGgtactatttctttcttcactttttcaaatgggctcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn...

Basic information

species Glycine max
transcript GLYMA03G36630.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36630.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0104g01120.t01 (Vitis vinifera), 5'ss of exon 1
TTAAGCATGTTAGTCATGTCACGTTCGATCGCTTCAATGGCTTTCTGGGTCTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGgtactatttctttcttcactttttcaa-atgggctcgctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-
||   ||| | |  ||||| || |||||||| |||||||| ||||||||||||||    ||||| |||||  | || || |  |  || |||||||| |||||| | |||  |||| | ||||      ||||  | ||                                                               
TTCGCCATATCACCCATGTGACCTTCGATCGGTTCAATGGGTTTCTGGGTCTTCCGTCGGAGTTCGAGGTGGAGGTGCCGGGACGAGTCCCCAGTGCCAGgtaccagttc--tcttgatttttgtgtcgtgggtgctcttaatttttgtagattttacctgggttttgattaaaatagtttgcaaaggctgggtttttgtgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298169635|gb|HO020995.1|HO020995
EST:     CTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAG                         TGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTC
genomic: CTTCCTCTTGAGTTAGAGGTTCATGTCCCCGCTCCTGTTCCCAGTGCTAGgtactatttc ... tcaattgcagTGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTC