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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCCCTCTTTCTGAGATATTTCGAATTTCGATACTTTGATCAGATCCACAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctctcacctatcaccgtcctcttctaacatttttttcaaaaaccgaaaatcatgcacatttttctgttacttacttgttgccttgatctatagc...

Basic information

species Glycine max
transcript GLYMA03G35790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170909|gb|HO015885.1|HO015885
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|13789951|gb|BG652542.1|BG652542
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|298192803|gb|HO033237.1|HO033237
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|298191462|gb|HO038941.1|HO038941
EST:     CAACACTCCTTCATCCACGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|6072466|gb|AW101853.1|AW101853
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|192315721|gb|FK011189.1|FK011189
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATTCAGTGTCGTGG                         TTCCAAGGGACCTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|10236212|gb|BE805100.1|BE805100
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAAGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGATAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|298189032|gb|HO035669.1|HO035669
EST:     CAACGCTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|208227691|gb|GE025897.1|GE025897
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|15815632|gb|BI787907.1|BI787907
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|11412512|gb|BF424523.1|BF424523
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|15199562|gb|BI423894.1|BI423894
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|8827283|gb|BE211013.1|BE211013
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGATAATGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|16995653|gb|BM085025.1|BM085025
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|9819988|gb|BE555501.1|BE555501
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|13791117|gb|BG653708.1|BG653708
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|9900279|gb|BE609247.1|BE609247
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|12773589|gb|BG238516.1|BG238516
EST:     CCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAA-GAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|193544455|gb|FK499784.1|FK499784
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|21594189|gb|BQ610071.1|BQ610071
EST:     CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|192303131|gb|FG997707.1|FG997707
EST:     CAACACTCCTTCATCCATGACGCTCGGCTCTTCAGGATCCAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
EST: gi|6718534|gb|AW306181.1|AW306181
EST:     CAGTGTCGTGG                         TTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA
genomic: CAGTGTCGTGGgttagtctct ... tttaatgcagTTCCAAGGAACTTCAGATTGCTGGAGGAGCTTGAGAAGGGAGAAAAAGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCCCCTCTTTCTGAGATATTTCGAATTTCGATACTTTGATCAGATCCACAACACTCCTTCATCCATGACGCTTGGCTCTTCAGGATCCAGTGTCGTGGgttagtctctcacctatcaccgtcctcttctaacatttttttcaaaaaccgaaaatcatgcacatttttctgttacttacttgttgccttgatctatagc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc