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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTGCCACTTCGAAACCAAATTTTCTTCCTTCGTTGGCATCTGTGATCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgtttctctcactttccacttcaattttattttaattttagttttatttttaattttccatgttcttctacattcgctgcgtattgatctgcaattgtctttttttgttttggggattcggcag

Basic information

species Glycine max
transcript GLYMA03G35490.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G35490.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.3 (Physcomitrella patens), 5'ss of exon 1
AGGTTTTGCCACTTCGAAACCAAATTTTCTTCCTTCGTTGGCATCTGTGATCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgtttctctcactttccacttcaattttattttaatttt--agttttatttttaattttccatgttcttctacattcgctgcgtattg-atctgcaattgtctttttttgttttggggattcggcag
                        |    |   || || |  ||| | |    ||     |||| ||||||| |||||||||||| ||||||||||||||||   ||         ||   || |   |  |  || |  |||   ||   | ||| ||   |  | | |  |  ||| |  | ||||    | |     |||  | ||  | ||  |              
-----------------------TTCAGGTGGGTTTGTAGTAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttgcgagaggcaatcaaaataattttcctgtgactactaa---------

upper sequence: GLYMA03G35490.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.2 (Physcomitrella patens), 5'ss of exon 2
AGGTTTTGCCACTTCGAAACCAAATTTTCTTCCTTCGTTGGCATCTGTGATCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgtttctctcactttccacttcaattttattttaatttt--agttttatttttaattttccatgttcttctacattcgctgcgtattg-atctgcaattgtctttttttgttttggggattcggcag
                             |   || || |  ||| | |    ||     |||| ||||||| |||||||||||| ||||||||||||||||   ||         ||   || |   |  |  || |  |||   ||   | ||| ||   |  | | |  |  ||| |  | ||||    | |     |||  | ||  | ||  |              
----------------------------GTGGGTTTGTAGTAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttgcgagaggcaatcaaaataattttcctgtgactactaa---------

upper sequence: GLYMA03G35490.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S475_6V6.1 (Physcomitrella patens), 5'ss of exon 2
AGGTTTTGCCACTTCGAAACCAAATTTTCTTCCTTCGTTGGCATCTGTGATCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgtttctctcactttccacttcaattttattttaatttt--agttttatttttaattttccatgttcttctacattcgctgcgtattg-atctgcaattgtctttttttgttttggggattcggcag
                                          ||| | |    ||     |||| ||||||| |||||||||||| ||||||||||||||||   ||         ||   || |   |  |  || |  |||   ||   | ||| ||   |  | | |  |  ||| |  | ||||    | |     |||  | ||  | ||  |              
----------------------------------------TAATCAGGGTCGGCTGTCATTCACCATGAGCAAATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatgtttattttttggaaggcgtttttctaccatctcctctattcatacttctgttgcgagaggcaatcaaaataattttcctgtgactactaa---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193557666|gb|FK511979.1|FK511979
EST:     CTCTTCTCCTCACAATGAGCAGATCAGGGCAAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: CTCTTCTCCTCACAATGAGCAGATCAGGGC-AACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|254319446|gb|GR830697.1|GR830697
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208264145|gb|GE062529.1|GE062529
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|192333496|gb|FK024025.1|FK024025
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208053735|gb|GD853060.1|GD853060
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTCGAAGAA                         GTACATGGACAAG
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAG
EST: gi|10255304|gb|BE823070.1|BE823070
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|7041610|gb|AW471504.1|AW471504
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|192296352|gb|FG991590.1|FG991590
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|14126515|gb|BG790953.1|BG790953
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|9901050|gb|BE610018.1|BE610018
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193501077|gb|FK464608.1|FK464608
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAG
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAG
EST: gi|207692585|gb|GD674838.1|GD674838
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193657862|gb|FK601497.1|FK601497
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|151409296|gb|EV279104.1|EV279104
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193357009|gb|FK323537.1|FK323537
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208023507|gb|GD821178.1|GD821178
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193493544|gb|FK460994.1|FK460994
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|16347640|gb|BI973235.1|BI973235
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|7028229|gb|AW458012.1|AW458012
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|151393472|gb|EV263347.1|EV263347
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193321395|gb|FK285223.1|FK285223
EST:     TCTCTTCCCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|26059780|gb|CA802694.1|CA802694
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193397176|gb|FK363280.1|FK363280
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208168402|gb|GD966922.1|GD966922
EST:     CCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: CCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|19268867|gb|BM885123.1|BM885123
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|213618034|gb|DB963667.1|DB963667
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208152583|gb|GD946566.1|GD946566
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|31468284|gb|CD410312.1|CD410312
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|192309180|gb|FG999099.1|FG999099
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|192333495|gb|FK024024.1|FK024024
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193691028|gb|FK632757.1|FK632757
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|14258516|gb|BG881424.1|BG881424
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|14990669|gb|BI316342.1|BI316342
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|19269146|gb|BM885402.1|BM885402
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208096942|gb|GD894217.1|GD894217
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|192328013|gb|FK021759.1|FK021759
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|151404612|gb|EV274426.1|EV274426
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193698140|gb|FK636691.1|FK636691
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|10252902|gb|BE820668.1|BE820668
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208269010|gb|GE068605.1|GE068605
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCATCCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|151409574|gb|EV279382.1|EV279382
EST:     TCTCTTCTCCTCACAGTGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|213593675|gb|DB971697.1|DB971697
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208308758|gb|GE104580.1|GE104580
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|207800148|gb|GD771121.1|GD771121
EST:     TCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGATAAGAAGCTTCAGA
genomic: TCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193661550|gb|FK604478.1|FK604478
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193612302|gb|FK560933.1|FK560933
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAGGAA                         GTACATGGACAAGGAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|298184568|gb|HO029781.1|HO029781
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|19269379|gb|BM885635.1|BM885635
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|193572056|gb|FK529605.1|FK529605
EST:     CAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: CAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|298177502|gb|HO023635.1|HO023635
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|208209620|gb|GE004339.1|GE004339
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA
EST: gi|19053330|gb|BM731997.1|BM731997
EST:     TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAA                         GTACATGGACAAGAAGCTTCAGA
genomic: TCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgttt ... gattcggcagGTACATGGACAAGAAGCTTCAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTTTTGCCACTTCGAAACCAAATTTTCTTCCTTCGTTGGCATCTGTGATCTCTTCTCCTCACAATGAGCAGATCAGGGCAACCACCGGATTTGAAGAAgttagtgtttctctcactttccacttcaattttattttaattttagttttatttttaattttccatgttcttctacattcgctgcgtattgatctgcaattgtctttttttgttttggggattcggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA