Sequence
atgc intronic sequence ATGC exonic sequenceTGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggggtttcttcaaaatttaatctttcttcgaattttgttgcccctggaatcgggcttttttttttcctctaaggtgtggttcttcaaatttag...
Basic information
species | Glycine max |
transcript | GLYMA03G35480.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G11490.1 (Arabidopsis thaliana), 5'ss of exon 1
TGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggggtttcttcaaaatttaatctttcttcgaattttgttgcccctggaatcgggcttttttttttcctctaaggtgt--ggttcttcaaatttag---
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TTAGACATGTCGCTCATGTTACCTTTGATCGTTTCCATGGCTTCCTTGGCTTGCCTGTTGAGTTTGAACCTGAAGTCCCTAGACGAGCTCCTAGTGCAAGgtt-cgtttacttgtaacgatgatagatgtttctggtaatgtt-tggtgattaggatt---ctcttagttcttgttttagttaacaaattcttgggaataatgtt
upper sequence: GLYMA03G35480.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g03140.t01 (Vitis vinifera), 5'ss of exon 1
TGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggggtttcttcaaaatttaatctttcttcgaattttgttgcccctggaatcgggcttttttttttcctctaaggtgtggttcttcaaatttag--
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TCAGGCATGTTGCTCATGTTACCTTTGATCGCTTCAATGGCTTTCTCGGCCTCCCTGTTGAGTTTGAACCAGAAGTGCCCAGAAGACCTCCTAGTGCCAGgtcagtttgaattgccctttttatttttctttttttggaaaattctgt--tttgattcttgattatttcttgaaaaatatgtattgggtttatgatcaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207816386|gb|GD787913.1|GD787913EST: TTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGAGCTAG TGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTGTCTTTTGATGC
genomic: TTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggg ... ctatttgcagTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTGTCTTTTGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGgtaacttggggtttcttcaaaatttaatctttcttcgaattttgttgcccctggaatcgggcttttttttttcctctaaggtgtggttcttcaaatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgtgg