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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTCTCAATCTTTCTCTCTCTTCGACCCTAATCTTCGCCTATCCCTCTCTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttcttatccttttaaaaaattaaactttattgctattttcattactttttgatcgttaaataaaacggtgtcactgtgatttcggtgggcaat...

Basic information

species Glycine max
transcript GLYMA03G34300.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395984|gb|EV265861.1|EV265861
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|209724178|gb|BW659712.1|BW659712
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|20813031|gb|BQ297509.1|BQ297509
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|4314103|gb|AI461222.1|AI461222
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|20449041|gb|BQ253165.1|BQ253165
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|15204096|gb|BI426864.1|BI426864
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|10233567|gb|BE802455.1|BE802455
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|20449080|gb|BQ253204.1|BQ253204
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|9204176|gb|BE330400.1|BE330400
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|120530487|gb|EH258620.1|EH258620
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|9563997|gb|BE473506.1|BE473506
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|209715618|gb|BW657385.1|BW657385
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT
EST: gi|17964485|gb|BM271219.1|BM271219
EST:     CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAG                         TTCTTTGTTGGTGGCAACTGGAAGTGT
genomic: CTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttc ... gtggttacagTTCTTTGTTGGTGGCAACTGGAAGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAATTCTCAATCTTTCTCTCTCTTCGACCCTAATCTTCGCCTATCCCTCTCTCCACCCAAACCCTCACGCGCCGTCATCGCCATGGCCGGCACCGGGAAGgtgctttttcttatccttttaaaaaattaaactttattgctattttcattactttttgatcgttaaataaaacggtgtcactgtgatttcggtgggcaat

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