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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatggttttggactcaaattgctcaattccgtttcgtgcctatgcatgcttcagctcggttattgtgttttttatgctttagtctttgatttttttgttcgttaactgtgaggattag

Basic information

species Glycine max
transcript GLYMA03G34050.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G03406.1 (Arabidopsis thaliana), 5'ss of exon 1
TGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatggttttggactcaaattgctcaattccgtttcgtgcctatgcatgcttcagctcggtta--ttgtgttttttatgctttagtctttgatttttttgttcgttaactgtgaggattag
 ||| |||| || ||||| || |||||||| || || || || || ||||| || ||||| |||||  | ||||||||||||||||| || |||||||||||    |  |  ||  ||   || | ||   ||  ||||| |||  || | |  ||  | ||| | |  || ||  |  | | |  ||   |||||   |||| |  ||| | | ||      ||
AGAATTTCAGAACATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGgt---cagagaatt--acatgaact-ctatgttttgtttc-tgca-attcttcttttggttcgatgaaattttgaatactgt-ccgtaaagtttgacacttttatctgtttattttgctttgaag

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 5'ss of exon 1
TGAAGTTCAAAAGATCGACGTGAATCCTCCCAAGGGGACGCGCGACTTCCCGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatggttttggactcaaattgctcaattccgtttcgtgcctatgcatgcttcagctcggttat-tgtgttttttatgctttagtctttgatttttttgttcgttaactgtgaggattag
|   || || ||||| || || ||||||||||  || || || || |||||||||||||| |||||| | ||||||||||| || || ||||||| ||||||   || |||      || |  | |   |||         |   |||| ||  || |  |  ||| | | ||| ||  || | || ||     |      ||  ||  |              
TTCGGTACAGAAGATTGATGTCAATCCTCCCAGAGGAACCCGAGATTTCCCGCCCGAGGATATGCGCCTCCGCAACTGGCTTTTTAACCATTTCAGAGAGgt---tagggtccctatcttacttcgtcgaat--------atatatatgtattttttaaatttgttttctttgtcttgaataccttggtagggaaagaaaatggacgcaat-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994195|gb|CF805941.1|CF805941
EST:     CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAG                         GTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG
genomic: CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatgg ... tgaggattagGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG
EST: gi|213595701|gb|DB962473.1|DB962473
EST:     CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAG                         GTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG
genomic: CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatgg ... tgaggattagGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG
EST: gi|213605041|gb|DB956374.1|DB956374
EST:     CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAAAG                         GTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG
genomic: CGCCCGAGGACATGCGCTTGCGCAACTGGCTCTTCAATCATTTCAAAGAGgtgtgtatgg ... tgaggattagGTTTCGCGGTTGTATGGATTTGAAGAGGTTGATTACCCGGTGCTTGAGTCG