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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCGAAGACGAAAAGCAAATCAGCGAAGCAGTCCTCCAGTTTTCGTTAGAGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttccaatctctttatttcggttttctcctttacttttagatctaccattttcacgccaatgcagcccttttcggatttcacgcgctttcttacta...

Basic information

species Glycine max
transcript GLYMA03G33790.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193539794|gb|FK493780.1|FK493780
EST:     AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACTCGATTGCTACG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
genomic: AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttcca ... tttatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
EST: gi|208128775|gb|GD931435.1|GD931435
EST:     AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
genomic: AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttcca ... tttatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
EST: gi|208333810|gb|GE127807.1|GE127807
EST:     AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
genomic: AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttcca ... tttatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
EST: gi|193381347|gb|FK345622.1|FK345622
EST:     AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGGTTGCTACG                         AATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA
genomic: AGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttcca ... tttatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGCGAAGACGAAAAGCAAATCAGCGAAGCAGTCCTCCAGTTTTCGTTAGAGACACTGTGTCTTGTTTTCTCTGAATCTAACACAGACCCGATTGCTACGgtaccttccaatctctttatttcggttttctcctttacttttagatctaccattttcacgccaatgcagcccttttcggatttcacgcgctttcttacta

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