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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacctttgcgatcatacttactgttattgattgtaaattattggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt...

Basic information

species Glycine max
transcript GLYMA03G33740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G37160.1 (Arabidopsis thaliana), 5'ss of exon 1
GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacc--tttgcgatcatacttactgtt--attgattgt--aaatta--ttggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt----------------------------------------------------------------------------------
 || |||||||| || || || ||||  || ||||| || ||||||||||| || || || || |||||||| ||| | |||||||||||||||||||||||     ||  |    ||| |  |  |  ||| | ||  |||||  ||  ||   |   || |||    |   | | || |    ||    |||    |||| || ||                                                                                  
AACGTATTTCAAGACGCCTGAAGGAAAGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTACACTCATGGCAAAACCGTTACTCAGgtgaagatttgattcgttttctttggtgtttatttttgaattgaaagtttaatccaatctgatttctttgcacttgtgattgctattacgaaattgctattaggttttgtgtaagaatatcaaatgcacatttcatttttatgttttgaaagtggtttctgagaatggatttgtgaaattttggtgtcag

upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 1
GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacctttgcgatcatacttactgttattgattgtaaattattggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt---
||| |||||||| || || || || |  ||||||||||| |||||||| || ||  | || ||||| ||||||||||| ||||||||||| |||||||||||     | |||  |||    |     ||| |  | ||||||    ||||  || |||    |  |  | |   ||  | |   |   | | |||   |    
GACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTACTCAGgtaaagatcaaatttttatatttgggtttaatagt-ttgattcgtcatta--ggatttctaatcattcaaatcggcaatttcagagaattagtatcgatggtt

upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G37160.2 (Arabidopsis thaliana), 5'ss of exon 1
GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacc--tttgcgatcatacttactgttattgattgtaaatt-attggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt--
 || |||||||| || || || ||||  || ||||| || ||||||||||| || || || || |||||||| ||| | |||||||||||||||||||||||     ||  |    ||| |  |  |  ||| | ||    |||| || || | |    |  |  || |    |||||   |    | | |  | |   | ||  
AACGTATTTCAAGACGCCTGAAGGAAAGTACAAGCTCCACTACGAGAAGACGCATCCCTCTGGGCTTCTTCACTACACTCATGGCAAAACCGTTACTCAGgtgaagatttgattcgttttctttggtgtttatttttg--aattgaaagtttaatccaatctgatttctttgcacttgtgattgctattacgaaattgctattag

upper sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 1
GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacctttgcgatcatacttactgttattgattgtaaattattggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt-------
|||||| ||||||||||| || ||  | || |||||||| || |||||||| || ||| | ||||||||||| |||| |||||| |||||||||||||||||     ||     |||  | |  |  | | |    ||  || |    |  ||  ||| |      ||| |   | |  ||  ||     | || |||         
GACCTACTTCAAAACCCCAGAAGGCCGTTACAAGCTTCACTATGAGAAGACCCATCCTGCTGGTCTTCTTCACTACGGCCATGGTAAAACCGTTACTCAGgtactgttt-----tttagggtttttttcaataccctt--ttcttttctgctgcgtttggttcctgagaaaaggggtgactggaaatggaaataagtggaaatcttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16348678|gb|BI974264.1|BI974264
EST:     CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAG                         GTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
genomic: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttccctta ... gaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
EST: gi|209728175|gb|BW651610.1|BW651610
EST:     CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAG                         GTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT
genomic: CTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttccctta ... gaatgagcagGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACCGCT