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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGACGTCCAAAGCCAAAGGGACTCTAATCTCTCCTCCGACGATGCATTCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttcccttcactttttttttcaaattcattactaaatgaggaaatttgtgccctaattcgtgagaattatcgattttttttattcatctcccaaacatgtgtgatagtatgtggagtcaattttgtgcag

Basic information

species Glycine max
transcript GLYMA03G33680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9987448|gb|BE661556.1|BE661556
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|193305878|gb|FK269233.1|FK269233
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|7588839|gb|AW704626.1|AW704626
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|192310641|gb|FK001065.1|FK001065
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|151393190|gb|EV263065.1|EV263065
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|18039839|gb|BM308133.1|BM308133
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|151404741|gb|EV274555.1|EV274555
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|192294446|gb|FG987375.1|FG987375
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
EST: gi|7589461|gb|AW705234.1|AW705234
EST:     TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAG                         AAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC
genomic: TCGCCAAACTCTACGCCTCCGTCGACGCCGACATTGAGGCCTTACTTCAGgtcacacttc ... ttttgtgcagAAAGCAGATACCGCTTCCAAGGAGAAAAGTAAGGCATCCACTGTGGCGATC