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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTGGTCTTTTATAAATATTGTAACACACGGTAGGGAACAGAACACAGATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttctcttctttccgttcccctttcgatttcgcttccttttcaattcgatttgtatctgcagttttcagtttttgattttccagtttcaataaa...

Basic information

species Glycine max
transcript GLYMA03G33260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189291|gb|HO037694.1|HO037694
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|298170069|gb|HO018693.1|HO018693
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|213589600|gb|DB965816.1|DB965816
EST:     GGTCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|193404955|gb|FK374250.1|FK374250
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAGCGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|151403736|gb|EV273546.1|EV273546
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|192324223|gb|FK017954.1|FK017954
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAACACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|213597756|gb|DB960313.1|DB960313
EST:     GGTCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|193406622|gb|FK375581.1|FK375581
EST:     ATTCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: A-TCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|193441307|gb|FK406012.1|FK406012
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATA
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATA
EST: gi|193478543|gb|FK447570.1|FK447570
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAG-AAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|298193736|gb|HO040384.1|HO040384
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
EST: gi|192334590|gb|FK025179.1|FK025179
EST:     GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG                         AGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: GATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... gattttgcagAGCTAGAAGAATTCAACGATGCCTCGCTATGATGATAAATACGGCAATACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGTGGTCTTTTATAAATATTGTAACACACGGTAGGGAACAGAACACAGATCCACTTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttctcttctttccgttcccctttcgatttcgcttccttttcaattcgatttgtatctgcagttttcagtttttgattttccagtttcaataaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcccct