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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGCCGTCAAAACTTCATCCGCCTCCTTCCTCAACCGCAAGGAGTCCGGCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccacgttccgcttcgcttttcccttttcgaataaataatggctcgcttttgacgcgtgattttttaatag

Basic information

species Glycine max
transcript GLYMA03G33080.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191755|gb|HO035837.1|HO035837
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298187329|gb|HO034478.1|HO034478
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGTGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|120532038|gb|EH260171.1|EH260171
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298195843|gb|HO044234.1|HO044234
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298175668|gb|HO015187.1|HO015187
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|5753437|gb|AI960724.1|AI960724
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|18041357|gb|BM309651.1|BM309651
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|9986785|gb|BE660893.1|BE660893
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298194658|gb|HO043130.1|HO043130
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|208194881|gb|GD989438.1|GD989438
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298189982|gb|HO032103.1|HO032103
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298175599|gb|HO015118.1|HO015118
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|298169469|gb|HO020829.1|HO020829
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAATAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
EST: gi|192298876|gb|FG987621.1|FG987621
EST:     GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTG                         ATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG
genomic: GCTTCCTCCATTTCGCCAAGTACCACGGCCTCGGAAACGACTTCGTTTTGgtgagtccac ... tttttaatagATTGACAACAGAGACTCCTCCGAGCCCAAGATCAGTGCTGAGAAAGCGGTG