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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTGCACTTTTATTTGTGCTCGTTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgag

Basic information

species Glycine max
transcript GLYMA03G33000.7
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193489536|gb|FK456295.1|FK456295
EST:     ACAGAACAACAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|207800405|gb|GD775410.1|GD775410
EST:     AGAACAATTAGTTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: AGAACAA-TAG-TAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193561881|gb|FK516858.1|FK516858
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193709781|gb|FK646049.1|FK646049
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193722890|gb|FK657466.1|FK657466
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|208022972|gb|GD820982.1|GD820982
EST:     ACACAGAACAATTGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193677865|gb|FK614979.1|FK614979
EST:     ACAGAACTAATTAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTCGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAAC-AA-TAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|24136670|gb|BU927180.1|BU927180
EST:     TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193683993|gb|FK621451.1|FK621451
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTCGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193558208|gb|FK513333.1|FK513333
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193583266|gb|FK538844.1|FK538844
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193706053|gb|FK648477.1|FK648477
EST:     ACAGAACTAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAAC-AATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|193563220|gb|FK520339.1|FK520339
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
EST: gi|208064662|gb|GD865938.1|GD865938
EST:     ACAGAACTAATAGTAGCAAGCAGAGCCCCAAG                         ATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC
genomic: ACAGAAC-AATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttttcgagATCTGTGCTTGAACCTTCACTTGTGTTTCCTTCCTTCTGCAGACGAGCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTTTGCACTTTTATTTGTGCTCGTTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG