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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATTCCTTTGCACTTTTATTTGTGCTCGTTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgagatctgtgcttgaaccttcacttgtgtttccttccttctgcag

Basic information

species Glycine max
transcript GLYMA03G33000.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298048|gb|FG991328.1|FG991328
EST:     TTCTTCTTCTTTCCTTTACACAGAACAATAGCAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|193353901|gb|FK321657.1|FK321657
EST:     ACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|193656797|gb|FK606713.1|FK606713
EST:     GTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: GTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|27446381|gb|CA953504.1|CA953504
EST:     CAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: CAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|298199436|gb|HO042799.1|HO042799
EST:     ACAGAACAACAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCTG
genomic: ACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|192296495|gb|FG989111.1|FG989111
EST:     ACACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: ACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|8827754|gb|BE211484.1|BE211484
EST:     GAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: GAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|7588509|gb|AW704365.1|AW704365
EST:     TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|9986811|gb|BE660919.1|BE660919
EST:     AATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: AATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|7588510|gb|AW704234.1|AW704234
EST:     TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG
EST: gi|151404690|gb|EV274504.1|EV274504
EST:     TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAG                         ACGAGCTTCACCTTGCGCCG
genomic: TTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcacct ... ccttctgcagACGAGCTTCACCTTGCGCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTATTCCTTTGCACTTTTATTTGTGCTCGTTCTTCTTCTTTCCTTTACACAGAACAATAGTAGCAAGCAGAGCCCCAAGgttctcaccttcatctcttctcttctcctctattttgctgtcacacacacactcacaagcattaacatctctcacacgctttatttgccttttcgagatctgtgcttgaaccttcacttgtgtttccttccttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG