1 5' 3' | 2 5' 3' | 3 5' 3' |
ACAATACTCAAACGCTGTTGAAGCGACCGACGAGTCTTGTGTGTGACCTCAAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatcttcattctcattccgcgtttccctttttctcactttttttttttttcaatttgaagctaaaatgtgtataaaactggaacag
species | Glycine max |
transcript | GLYMA03G30880.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|9900352|gb|BE609320.1|BE609320
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|13480558|gb|BG509901.1|BG509901
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|254323967|gb|GR836199.1|GR836199
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|12773904|gb|BG238831.1|BG238831
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|8827595|gb|BE211325.1|BE211325
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|4437132|gb|AI522997.1|AI522997
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: GTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|298198717|gb|HO042080.1|HO042080
genomic: GTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|27424994|gb|CA936514.1|CA936514
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: CTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|298193977|gb|HO040625.1|HO040625
genomic: CTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCACATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|15285034|gb|BI468925.1|BI468925
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|254334206|gb|GR849124.1|GR849124
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|7925936|gb|AW831962.1|AW831962
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|19269395|gb|BM885651.1|BM885651
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|254323968|gb|GR836200.1|GR836200
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGC-TGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|6846635|gb|AW348925.1|AW348925
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: CCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGANNNCGTTTCAATCGAGCTCAAGAACGGEST: gi|15815172|gb|BI787447.1|BI787447
genomic: CCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: CGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|254334205|gb|GR849123.1|GR849123
genomic: CGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|298186306|gb|HO036939.1|HO036939
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGCTTCAATCGAGCTCAAGAACGGEST: gi|31468972|gb|CD411000.1|CD411000
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|298172347|gb|HO019387.1|HO019387
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|6482740|gb|AW201964.1|AW201964
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGGEST: gi|31473716|gb|CD415744.1|CD415744
genomic: AAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
EST: GTCTTCTCTGCCGCCATGAAGCTTGTCAG GTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
genomic: GTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatc ... actggaacagGTTTCTCATGAAGCTGAACAACGAAACCGTTTCAATCGAGCTCAAGAACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATACTCAAACGCTGTTGAAGCGACCGACGAGTCTTGTGTGTGACCTCAAAACCCTGCCGTCAGTCACCGTCTTCTCTGCCGCCATGAAGCTTGTCAGgtctcacatcttcattctcattccgcgtttccctttttctcactttttttttttttcaatttgaagctaaaatgtgtataaaactggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC