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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCCACACACATACATCATCAAAAAACACACACGACACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGgtatagccacgttctctcttccctctttcatccccggtgataagaacaagcacccaccgtttaacgctaattatatgtgtttttggtttttttttttttttttgcag

Basic information

species Glycine max
transcript GLYMA03G30110.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193642633|gb|FK593331.1|FK593331
EST:     TTCCTTCATTCCGCAG                         CAGCAAACATCCTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
genomic: TTCCTTCATTCCGCAGgtatagccac ... ttttttgcagCAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
EST: gi|208103976|gb|GD902651.1|GD902651
EST:     CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAG                         CAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGgtatagccac ... ttttttgcagCAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
EST: gi|254315473|gb|GR825282.1|GR825282
EST:     CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAG                         CAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGgtatagccac ... ttttttgcagCAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
EST: gi|16346204|gb|BI971799.1|BI971799
EST:     CACACTCCCATACACACACGTAGTCTCGCACACATTCCTTCATTCCGCAG                         CAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT
genomic: CACACTCCCATACACACACGTTGTCTCGCACACATTCCTTCATTCCGCAGgtatagccac ... ttttttgcagCAGCAAACATCTTTACCTTAAACGACAACAATGGCCGATGCCGAGGATATT