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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGgtgtaatcattatcgatatctcacactgtcaattttgtatttgatactatactcttacattctctttctgttattaatacgtgctgaatatatagatggt...

Basic information

species Glycine max
transcript GLYMA03G29820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29820.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 3
AGAACTCATCA-TCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGgtgtaatcattatcgatatctcacactgtcaattttgtatttgatactatactcttacattctc---tttctgttattaatacgtgctgaatatatagatggt--
       || | ||||  || || ||||| || || ||||||||||||||| |||||||||||||||| ||| ||  ||  | ||      | |||   |||||     | || |||     | |||   ||||      |   ||   || |    |     | |  |||| | | |   | | ||  |     
-------ATAACTCAGATATCAGACCTCCAACGCTAAACATTTTCCCCTCTCAGCCTATGCACGTAGAACCACCA--ATAAAGgt-----atataactgttatca----cacatacttcttttcttgcccttgagttctcagcttttttttttaaggtaaaaatgaaaaatatgggtttgttttgtacttctcag