1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaaacccaatccccttttttgttgctaaatttgtttgatttattttaattcctgatttgaaatgttgggttagtttcaatttgattattacattttacagaggataaaaagtgtgttttattttgtttag
species | Glycine max |
transcript | GLYMA03G29320.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAG GGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTEST: gi|209709423|gb|BW678927.1|BW678927
genomic: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaa ... ttttgtttagGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTT
EST: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAG GGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTEST: gi|209704327|gb|BW678303.1|BW678303
genomic: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaa ... ttttgtttagGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTT
EST: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAG GGTAGCTTTGCAATTTGTTCATGACATGCAAGAGGGGGCTCAGAGGAACTTEST: gi|19348148|gb|BM892680.1|BM892680
genomic: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaa ... ttttgtttagGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTT
EST: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAG GGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTT
genomic: ACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaa ... ttttgtttagGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGgtcaacacaaacccaatccccttttttgttgctaaatttgtttgatttattttaattcctgatttgaaatgttgggttagtttcaatttgattattacattttacagaggataaaaagtgtgttttattttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG