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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTCAAGTAGCTCATTACCAGAAGATTCAATAGCAGCTTTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtaattggagccacataatctgattcatgacttttatgcttctcttaatctcaatgactaaataccaatattatgtggagatataaggtgagtttgatgg...

Basic information

species Glycine max
transcript GLYMA03G28210.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G28210.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 1
AGAGTCAAGTAGCTCATTACCAGAAGATTCAATAGCAGCTTTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtaa----ttggagccacataatctgattcatgacttttatgcttctcttaatctcaatgactaaataccaatattatgtggagatataaggtgagtttgatgg
  ||||     || |  | |  || ||||| ||     | |  ||||| ||  | || |||||||| || |||||||| ||||| ||||| ||||||||||||     |||||  ||   ||| | | | || |    | |||   |  ||  ||    |  | | ||     |  | |     | ||  ||    ||||    
CAAGTCGGCCGGCCCCGTGCTCGATGATTCGATCATGTCGTGGTATCTGTCCATGGAGAGTGGCAAGTTCTGGTTCCCGGCTCAGGTCTACAACCGTGAGgtataactttggaatcaagcaattttaattatcatccctttgcaattaatag-ctagcagtttcattattgtcaccaagcatgcaaattgggatgatttgt---

upper sequence: GLYMA03G28210.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G41170.1 (Arabidopsis thaliana), 5'ss of exon 1
AGAGTCAAGTAGCTCATTACCAGAAGATTCAATAGCAGCTTTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtaattggagccacat---aatctgattcatgacttttatgcttctcttaatctcaatgactaaat-accaatattatgtgg--agatataaggtgagtttgatgg---------------
|   |||      |    |||   ||||||  |      ||  ||      |||||||| |||||| ||||||||||||||||||||||| || || ||||||||       |      ||||     ||    |||  |  || | ||        |       | ||| || | |        || | ||  ||  | |  ||                
ATCATCATCATATTTGGCACCTATAGATTCTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCTACAATCGCGAGgtaatcatgcttatgatcgaatcatgaacaaagatttcgtcttttttttgtgtgtggttttggtgttacccatttgactgaattggagaaaaattgcttcttttgatttctaaatttgcag

upper sequence: GLYMA03G28210.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0040g01290.t01 (Vitis vinifera), 5'ss of exon 1
AGAGTCAAGTAGCTCATTACCAGAAGATTCAATAGCAGCTTTATATCTTTCTCTTGAAAGTGGCAAATTTTGGTTCCCTGCTCAAGTCTATAACCGTGAGgtaa----ttggagccacata-atctgattcatgacttttatgcttctc---ttaatctcaatgactaaataccaatattatgtggagatataaggtgagtttgatgg------------------------------------
 ||| | ||  | |||||| | |  ||||||||    ||||  |||||||| || || ||||||||  |||||||||| ||||| |||||||||||||||||||     | ||   | |||  | | |  | | | |||   | |  ||   | ||  | ||| || ||||       | |||      |    | |   |||| ||                                     
TGAGCCCAGCTGTTCATTATCTGTTGATTCAATCAAGGCTTGGTATCTTTCCCTAGAGAGTGGCAAGCTTTGGTTCCCAGCTCAGGTCTATAACCGTGAGgtaaacagctcgaattatatatgttttaaccgtaagtttgtcgttcttcatatcaaattaaattac-aaatctttggttgatgccattgttattgttctttttgttgttgaacatatgaatgaagttttcctttctgggtgcag