Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCTAACAACACAACTTCAACAAATTAGGGCTTTTATTATTCTTTGCAATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttctctataaacccttccttaaaaaaaaaacaaaacaaaacccatgttttttttttttttatatatatatattgttcttcctttcttacttagttaattatcactttttgttttcag

Basic information

species Glycine max
transcript GLYMA03G27180.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208118249|gb|GD920102.1|GD920102
EST:     AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGCTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
EST: gi|193656083|gb|FK605369.1|FK605369
EST:     AATCATATCATATCCTTCACTCCCTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
EST: gi|193726919|gb|FK660245.1|FK660245
EST:     ATCATATCATATCCTTCACTTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGGAACCCGTCCACGATAATGC
genomic: ATCATATCATATCCTTCACT-CCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGG-AACCCGTCCACGATAATGC
EST: gi|207789051|gb|GD762163.1|GD762163
EST:     AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
EST: gi|208233332|gb|GE034041.1|GE034041
EST:     AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAAC
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAAC
EST: gi|193426689|gb|FK391298.1|FK391298
EST:     CTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: CTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
EST: gi|193533866|gb|FK492941.1|FK492941
EST:     AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
EST: gi|193446617|gb|FK413162.1|FK413162
EST:     AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCC
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCC
EST: gi|208261679|gb|GE060034.1|GE060034
EST:     AATCATATCATATCCTTCACTCCTTCGCTTCACTCTCAAAACTCCCACAG                         TTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT
genomic: AATCATATCATATCCTTCACTCCTTCACTTCACTCTCAAAACTCCCACAGgtaacacttc ... ttgttttcagTTGAAGAGACATGTTGGACTATGAATGGGGGAACCCGTCCACGATAATGCT