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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTAGCTAAATTCCTCTCTCTCTCTCTTTCTCTTCGAGGGTTTGGGTTTCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctcttctttctcttcagttttttcatcgttgatttctagggctcagatctgttccccctttttctttttcttttttcaattgcgttagggctctc...

Basic information

species Glycine max
transcript GLYMA03G27030.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717740|gb|BW654028.1|BW654028
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|24135816|gb|BU926326.1|BU926326
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|18040422|gb|BM308716.1|BM308716
EST:     TTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|24136970|gb|BU927480.1|BU927480
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|209707884|gb|BW657002.1|BW657002
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254335361|gb|GR846858.1|GR846858
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254319865|gb|GR830889.1|GR830889
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|11687383|gb|BF595059.1|BF595059
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|11412106|gb|BF424117.1|BF424117
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|42722495|gb|CK768394.1|CK768394
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254331143|gb|GR843262.1|GR843262
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254348976|gb|GR860248.1|GR860248
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|23727038|gb|BU761533.1|BU761533
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|7685781|gb|AW756429.1|AW756429
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|7233109|gb|AW568459.1|AW568459
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|213599223|gb|DB962274.1|DB962274
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|18690716|gb|BM519564.1|BM519564
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|16997284|gb|BM086656.1|BM086656
EST:     TCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|5606035|gb|AI900133.1|AI900133
EST:     AAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: AAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|15201211|gb|BI424752.1|BI424752
EST:     TTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|23727594|gb|BU761832.1|BU761832
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|192331510|gb|FK023415.1|FK023415
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|16996576|gb|BM085948.1|BM085948
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|19453406|gb|BM954816.1|BM954816
EST:     CTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: CTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254347759|gb|GR854008.1|GR854008
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|192309090|gb|FG999051.1|FG999051
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254321258|gb|GR827707.1|GR827707
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|11412310|gb|BF424321.1|BF424321
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|213596853|gb|DB958061.1|DB958061
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|7233167|gb|AW568516.1|AW568516
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|7589650|gb|AW705420.1|AW705420
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|18040608|gb|BM308902.1|BM308902
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|254328558|gb|GR832930.1|GR832930
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
EST: gi|7589082|gb|AW704864.1|AW704864
EST:     TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCG                         TGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA
genomic: TCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctctt ... tcttgtgtagTGCATTTTTGAGGTGCCGCTGTCATGTTTGGGCGTGGTGGACCAAGGAGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACTAGCTAAATTCCTCTCTCTCTCTCTTTCTCTTCGAGGGTTTGGGTTTCTCTTCCTCCCTTGGAGAAAAAGAAGAGCCACCGCTGCGACGCCGTTCGgtacgctcttctttctcttcagttttttcatcgttgatttctagggctcagatctgttccccctttttctttttcttttttcaattgcgttagggctctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc