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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGCAGGAGCAAAAGGGTTCGTTGAAGCAGATAATGCAGAGGCCATAATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACAgtacttacccttttcttctctcttttatttcatcaaacacaacacttaatcacttattcctttttctgatgaacgaatcaattacttgttttcttaagaacaataattaaaattttaatgtgattattattattattattattattattattattattatggtctgtgctgtgatgcaatttcag

Basic information

species Glycine max
transcript GLYMA03G26690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G26690.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0021g01870.t01 (Vitis vinifera), 5'ss of exon 1
CTATGGCAGGAGCAAAAGGGTTCGTTGAAGCAGATAATGCAGAGGCCATAATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACAgtacttacccttttcttctctcttttatttcatcaaacacaacacttaatc-acttattcctttttctgatgaacgaatcaattacttgttttcttaagaacaataattaaaattttaatgtgattattattattattattattattattattattattatggtctgtgctgtgatgcaatttcag
  ||||||||| | || |  ||||| ||||| || |||||||| ||||| || |||||||| |||||||||||  | || ||||| |  || ||||||||||| ||| || |    |||||| ||| |||| |      | ||||| | |  | | || |||  || ||  |                                                                                                                  
AAATGGCAGGAACGAAGGAATTCGTGGAAGCGGACAATGCAGAAGCCATCATAACCAGAATCGAACACAAATCTAGGAAAATCGAGAGCTTACTCAAACAgtaattaaccctaatctctctcattt-tttcgttttctcccacactaatttgattcatccctacttttgcag------------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192316816|gb|FK010817.1|FK010817
EST:     ATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACA                         GTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATTTGCCAT
genomic: ATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACAgtacttaccc ... gcaatttcagGTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATTTGCCAT
EST: gi|10235705|gb|BE804593.1|BE804593
EST:     ATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACA                         GTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATTTGCCAT
genomic: ATTACCAGAATTGAACACAAATCGCGAAAGATCGAAACTTTGCTCAAACAgtacttaccc ... gcaatttcagGTATAAGCCCGTGGAAGCCCTTAAAACTGCCCTTGAAGGCACATTTGCCAT