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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGAAGCTCGACGAAGCCCTAATTTCGCGTCTCGAGCGCATCACCTCTCGCACTCCCCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGgtacctccatccatttcctcccttctctccttcccttattttcttaaactataatttgatgatgtcgtttctttgtgtcgcag

Basic information

species Glycine max
transcript GLYMA03G25740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G25740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 1
GTTGCCAGAAGCTCGACGAAGCCCTAATTTCGCGTCTCGAGCGCATCACCTCTCGCACTCCCCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGgtac---ctccatccatttcctcccttctc-----tccttcccttattttct-taaactataatttgatgatgtcgtttctttgtg--tcgcag
| ||||||| ||| ||| || ||||||||   ||| |  | ||| |||| |||||| |||| ||||||||||| || ||||| || |||||||| ||||||||      |  |  || || | | |||||     |  |    ||  ||||| |    | |   |  ||||| |  ||| |   ||  | | ||
GATGCCAGAGGCTGGACCAAACCCTAATTGACCGTGTTCAACGCCTCACTTCTCGCCCTCCTCACGTCTTTCTCCGCCGCGGTGTCTTCTTCGCTCACCGgtatgattgctttgtatatcattctttctcagtgtttttgtttttggtttctatgtgttttgtgtgaatgatttgatttttgaatgaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811614|gb|BQ296092.1|BQ296092
EST:     GTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCG                         CGATTTCGCGGAGATTCTGGACGCGTATGAGAGGGGAGATAAGTTCTACTT
genomic: GTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGgtacctccat ... tgtgtcgcagCGATTTCGCGGAGATTCTGGACGCGTATGAGAGGGGAGATAAGTTCTACTT
EST: gi|26047670|gb|CA784386.1|CA784386
EST:     TCTCGCACTCCCCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCG                         CGATTTCGCGGAGATTCTGGACGCGTATGAGAGGGGAGATAAGTTCTACTT
genomic: TCTCGCACTCCCCACGTCTTTCTACGACGCGGCGTTTTCTTCGCCCACCGgtacctccat ... tgtgtcgcagCGATTTCGCGGAGATTCTGGACGCGTATGAGAGGGGAGATAAGTTCTACTT