Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTGCTGTCGCGGCCCTTCACCACCACCGAAGGCCACCGCCCCTCCATCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttccttcttttcttctttttcgatcactttaattttttttttttttgaaaatttgataggattttttatgatttcgatcatataagccattttgaa...

Basic information

species Glycine max
transcript GLYMA03G24630.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193387910|gb|FK354741.1|FK354741
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTTCCATGACAGAACGAGATCG
EST: gi|193382651|gb|FK345848.1|FK345848
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTTCCATGACAGAACGAGATCG
EST: gi|193379793|gb|FK345351.1|FK345351
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTT-CCATGACAGAACGAGATCG
EST: gi|193385586|gb|FK349338.1|FK349338
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTT
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTT
EST: gi|193305739|gb|FK269164.1|FK269164
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTT-CCATGACAGAACGAGATCG
EST: gi|193305633|gb|FK270990.1|FK270990
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTTCCATGACAGAACGAGATCG
EST: gi|193311111|gb|FK275063.1|FK275063
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGGACAGCTTTTT
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGG-ACAGCTTTTT
EST: gi|193381654|gb|FK347077.1|FK347077
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTT-CCATGACAGAACGAGATCG
EST: gi|193380604|gb|FK349234.1|FK349234
EST:     TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAA                         GGGACAGCTTTTTCCATGACAGAACGAGATCG
genomic: TCGTCCACAAACGCAGCCTTGACATTCTCCACGATCCTTGGTTCAATAAAgtatttcctt ... ttaaaattagGGGACAGCTTTTTCCATGACAGAACGAGATCG