1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCTCCACCATTCCTTGCTTCGAGGAGGTTCCAATCATGCCCTTCAACAAGAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAAgtatggtttttgtttttttttttgtggacaaatgttaacttgttagaatgttagttttgttagctgaggggatcgaatccgtaatcttttccctcttccc...
species | Glycine max |
transcript | GLYMA03G23870.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAA GATTACCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTEST: gi|213602852|gb|DB970543.1|DB970543
genomic: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAAgtatggtttt ... tctagtgcagGATTACCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGT
EST: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAA GATTACCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGTEST: gi|151407763|gb|EV277578.1|EV277578
genomic: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAAgtatggtttt ... tctagtgcagGATTACCTTCTGGATGCTCCAGTTTCTGTTGGAGATGGATTCTCTTTCAGT
EST: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAATTCTAGTGCAEST: gi|151407763|gb|EV277578.1|EV277578
genomic: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGA-C----C-A----Agtatggtttt ... t
EST: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAATTCTAGTGCA
genomic: GAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGA-C----C-A----Agtatggtttt ... t
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTCCACCATTCCTTGCTTCGAGGAGGTTCCAATCATGCCCTTCAACAAGAAAATCTCTCAAGTTGAATTGCAGTTCAAGTGGCAATAATGGTGACCAAgtatggtttttgtttttttttttgtggacaaatgttaacttgttagaatgttagttttgttagctgaggggatcgaatccgtaatcttttccctcttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccctc