1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTATTTGCGGTTTCTTCTTCTTCTCACGTTCTACCTAACATTTTCTAAAACATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaactctctctctctctctctctctctctcaatctgttacaccgtcattacgcaacttttgaaaccccatattgcaatttgtaaacttttcctt...
species | Glycine max |
transcript | GLYMA03G22220.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|6964421|gb|AW433114.1|AW433114
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|192308232|gb|FK001302.1|FK001302
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|192308233|gb|FK001303.1|FK001303
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|208159032|gb|GD951757.1|GD951757
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|298185814|gb|HO030975.1|HO030975
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGGACTGTGAAGTTTCATTGATTCTTGEST: gi|4289246|gb|AI441448.1|AI441448
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: GCCGCAGAGTTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|6964283|gb|AW432976.1|AW432976
genomic: GCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAAACG AGTTTTTGAAGGCGAAGTGCTTAATGAACTGGGAAGTTTCATTGATTCTTGEST: gi|193444022|gb|FK410272.1|FK410272
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: GAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTACTTAATGAAEST: gi|208334499|gb|GE128762.1|GE128762
genomic: GAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAA
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|298168983|gb|HO020287.1|HO020287
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAGAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|208044561|gb|GD841041.1|GD841041
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|298164053|gb|HO013698.1|HO013698
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|151409001|gb|EV278809.1|EV278809
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|193386253|gb|FK350775.1|FK350775
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAACGAACTGTGAAGTTTCATTGATTCTTGEST: gi|208280986|gb|GE078874.1|GE078874
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|41145861|gb|CK606072.1|CK606072
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGEST: gi|208286434|gb|GE087822.1|GE087822
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
EST: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACG AGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
genomic: CATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaac ... ttttttccagAGTTTTTGAAGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTTGCGGTTTCTTCTTCTTCTCACGTTCTACCTAACATTTTCTAAAACATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaactctctctctctctctctctctctctcaatctgttacaccgtcattacgcaacttttgaaaccccatattgcaatttgtaaacttttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc