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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACTTTTCGAGAAAGGAAAAAAAAAGAGTTTCCGGCATTATTCCATCATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgttcccttcctcttcttcccaatctgcaaaaatttccaacacctctttctttttattgctcttcattcttcgccgcattttcaatccgcagt...

Basic information

species Glycine max
transcript GLYMA03G21680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174852|gb|HO017961.1|HO017961
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|58020884|gb|CX707626.1|CX707626
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31465725|gb|CD407753.1|CD407753
EST:     CATGTACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|193579697|gb|FK536382.1|FK536382
EST:     CGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|208123014|gb|GD923678.1|GD923678
EST:     CTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31561045|gb|CD486883.1|CD486883
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|207681089|gb|GD664104.1|GD664104
EST:     CTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|18734962|gb|BM528486.1|BM528486
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|58020461|gb|CX707203.1|CX707203
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31461804|gb|CD403832.1|CD403832
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|208181508|gb|GD974145.1|GD974145
EST:     TGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: TGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|193387691|gb|FK350952.1|FK350952
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|192306620|gb|FG998816.1|FG998816
EST:     TCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGGAAATTGGCGTGAAG
genomic: TCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|19268794|gb|BM885050.1|BM885050
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|8284542|gb|BE022110.1|BE022110
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|193629314|gb|FK575406.1|FK575406
EST:     TTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: TTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|151393707|gb|EV263582.1|EV263582
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|151393109|gb|EV262984.1|EV262984
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|58021248|gb|CX707990.1|CX707990
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|7640573|gb|AW734935.1|AW734935
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31463910|gb|CD405938.1|CD405938
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|19054065|gb|BM732732.1|BM732732
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|14258994|gb|BG881902.1|BG881902
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31476666|gb|CD418694.1|CD418694
EST:     TTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: TTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|8826541|gb|BE210271.1|BE210271
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|192306619|gb|FG998815.1|FG998815
EST:     CATGAACGCTCTTCCCACTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGGAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31305716|gb|CD390919.1|CD390919
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|7145658|gb|AW507580.1|AW507580
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|31312013|gb|CD397216.1|CD397216
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|151410901|gb|EV280716.1|EV280716
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|208178817|gb|GD975298.1|GD975298
EST:     CTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|19054231|gb|BM732898.1|BM732898
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|208245805|gb|GE044733.1|GE044733
EST:     CTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|22523442|gb|BU082253.1|BU082253
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|17022453|gb|BM093487.1|BM093487
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|193648424|gb|FK597115.1|FK597115
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
EST: gi|151408353|gb|EV278161.1|EV278161
EST:     CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAG                         TTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG
genomic: CATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgt ... tgtgtttcagTTTATGCGAAGAAAACTGGCGATGTGACGGAGTTGCAAATTGGCGTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTGACTTTTCGAGAAAGGAAAAAAAAAGAGTTTCCGGCATTATTCCATCATGAACGCTCTTCCCATTCTTCTCTTCTTCCTCTTCGTTTCGGCATTAGgtattgttgttcccttcctcttcttcccaatctgcaaaaatttccaacacctctttctttttattgctcttcattcttcgccgcattttcaatccgcagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttccc