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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGgtttgtgttgttctttgtttttgtgttttcagcacacactctcacatgcacacaccaccctttgtctagaaactcttgtttccttttaaaaatgttgtctttgttgcag

Basic information

species Glycine max
transcript GLYMA03G15830.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G15830.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv08s0007g01520.t01 (Vitis vinifera), 5'ss of exon 1
------------------ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAACCTTCTGTCCTTGAATCCTCTGACCAAGgtttgtgttgttctttgtttttgtgttttcagcacacactctcacatgcacacaccaccctttgtctagaaactcttgtttccttttaaaaatgttgtctttgttgcag
                  ||||| || || |||||||||||||| ||||||||||  || || ||||||||||| || || |||||  ||||||| |    |  ||     ||| || | |     | | |   |   |  | |  | ||| |      |||    |||              | |||     | |||  |||  |   
ACCGTTTGATCTCCGGCAATGGGAGCCCGCTGCTCTAAATTCTCATTCTGCTGGTGGCAATCTCACCTCAAACCCTCAGTTCTTGACCCCTCTGATC----TCGgtacctatctctgctatatctctcttactgctttcgatgatcttcactc--tgttcttcaattag--------------tgttacggccgatgttcttgcag---