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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCCCAACACTCACCATGGTGGCAGATTCTAAGTCCAATTCCGACCTCTCCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgcaaaacgctatctgggttttctttctttttttttttctttttttttttttctggggattctctcttttttcatgatcttgtgaaaagaccca...

Basic information

species Glycine max
transcript GLYMA03G14780.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21994526|gb|BQ786054.1|BQ786054
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|17022665|gb|BM093699.1|BM093699
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|7685497|gb|AW756145.1|AW756145
EST:     CTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|208086743|gb|GD879889.1|GD879889
EST:     CTTCGGAAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CTTCGGAAAAA-TCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|209724656|gb|BW677736.1|BW677736
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|24136062|gb|BU926572.1|BU926572
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|151397018|gb|EV266891.1|EV266891
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|213595388|gb|DB966526.1|DB966526
EST:     CCTTCGGAAAAATCCTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|7685710|gb|AW756358.1|AW756358
EST:     CTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|151396786|gb|EV266659.1|EV266659
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
EST: gi|18734274|gb|BM528089.1|BM528089
EST:     CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAG                         GTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG
genomic: CCTTCGGAAAAATCTTTGCCAGCAGTGCTTTCTCTGCATGTTTCGCTGAGgtcatttgca ... attgaaatagGTGTGTACTATTCCTTTGGATACTGCCAAAGTGAGGCTTCAGCTTCAAAAG