1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAGGAGGAAGAGGGTCCTCCTGATTTTGCTTTGCTTGATCCCGAGGACAATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggtttcttaatctgtgattctaaaatgtgcactgtttgtggcttccaattctcattgaatgtataatgttttagagtattgaaaccccttttg...
species | Glycine max |
transcript | GLYMA03G14200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCGEST: gi|209708143|gb|BW671159.1|BW671159
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCGEST: gi|15664172|gb|BI701543.1|BI701543
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCG
EST: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGC ATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCG
genomic: AATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggt ... tattttgcagATACGTCTCAGGATACAAAAATCGTTTTCAGAACTTTATAAAATACCTTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGGAGGAAGAGGGTCCTCCTGATTTTGCTTTGCTTGATCCCGAGGACAATTCTAGGCCTCGTAGAATTGCTCTCTTCGTTGAGCCTTCTCCTTTTGCgtgagttggtttcttaatctgtgattctaaaatgtgcactgtttgtggcttccaattctcattgaatgtataatgttttagagtattgaaaccccttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttt